Prof. Dr. Serena DeBeer - Inorganic Spectroscopy

Prof. Dr. Serena DeBeer
Director
Department Inorganic Spectroscopy

Vita

B.S. (Chemistry) Southwestern University, TX, USA (1995)
Ph.D. (Chemistry)Stanford University, TX, USA (2002)
Beam Line ScientistSSRL, SLAC, Stanford, University (2001-2003)
Staff ScientistSSRL, SLAC, Stanford, University (2003-2009)
Assistant ProfessorCornell University, NY, USA (2009-2012)
Research Group Leader
MPI for Bioinorganic Chemistry; today: MPI CEC  (2011-2017)
Group leaderPINK Beamline, Energy Materials In-Situ Laboratory, Helmholtz Zentrum, Berlin (since 2012)
Adjunct Associate ProfessorDepartment of Chemistry and Chemical Biology, Cornell University (since 2012)
Honorary FacultyRuhr University Bochum (since 2014) 
DirectorInorganic Spectroscopy, MPI CEC (since 2017)

Publications

Selected publications

  1. Kowalska, J. K., Hahn, A. W., Albers, A.,  Schiewer, C. E., Bjornsson, R., Lima, F. A., Meyer, F., DeBeer, S. (2016) X-ray Absorption and Emission Spectroscopic Studies of [L2Fe2S2]n Model Complexes: Implications for the Experimental Evaluation of Redox States in Iron–Sulfur Clusters, Inorganic Chemistry, 55, 4485-4497.
  2. Kupper, C., Rees, J.A., Dechert, S., DeBeer, S., Meyer, F. (2016) Complete Series of {FeNO} 8,{FeNO} 7 and {FeNO} 6 Complexes Stabilized by a Tetracarbene Macrocycle, J. Am. Chem. Soc., 138, 7888–7898.
  3. Rees, J.A., Wandzilak, A., Maganas, D., Wurster, N.I.C., Hugenbruch, S., Kowalska, J.K., Pollock, C.J., Lima, F.A., Finkelstein, K.D., DeBeer, S. (2016) Experimental and theoretical correlations between vanadium K-edge X-ray absorption and Kβ emission spectra, J. Biol. Inorg. Chem. (Special Issue in honor of Prof. Edward I. Solomon), 21, 793-806.
  4. Van Kuiken, B., Hahn, A.W., Maganas, D., DeBeer, S. (2016) Measuring Spin-Allowed and Spin-Forbidden d–d Excitations in Vanadium Complexes with 2p3d Resonant Inelastic X-ray Scattering, Inorganic Chemistry, 55 (21), 11497-11501.
  5.  Hugenbruch, S., Shafaat, H. S.,  Krämer, T., Delgado-Jaime, M. U., Weber, K., Neese, F., Lubitz, W., DeBeer, S. (2016) In search of metal hydrides: an X-ray absorption and emission study of [NiFe] hydrogenase model complexes, Phys. Chem. Chem. Phys. 18, 10688-10699. (cover article)
  6. Pollock, C. J. and DeBeer, S. (2015) Insights into the Geometric and Electronic Structure of Transition Metal Centers from Valence-to-Core X-ray Emission Spectroscopy, Accounts of Chemical Research, 48, 2967-2975.
  7. Rees, J. A., Bjornsson, R., Schlesier, J., Sippel, D., Einsle, O., and DeBeer, S. (2015) The Fe–V Cofactor of Vanadium Nitrogenase Contains an Interstitial Carbon Atom, Angewandte Chemie International Edition 54, 13249-13252.
  8. van Schooneveld, M. M., and DeBeer, S. (2015) A close look at dose: Toward L-edge XAS spectral uniformity, dose quantification and prediction of metal ion photoreduction, Journal of Electron Spectroscopy and Related Phenomena 198, 31-56.
  9. Beckwith, M. A., Ames, W., Vila, F. D., Krewald, V., Pantazis, D. A., Mantel, C., Pecaut, J., Gennari, M., Duboc, C., Collomb, M.-N., Yano, J., Rehr, J. J., Neese, F., and DeBeer, S. (2015) How Accurately Can Extended X-ray Absorption Spectra Be Predicted from First Principles? Implications for Modeling the Oxygen-Evolving Complex in Photosystem II, Journal of the American Chemical Society 137, 12815-12834.
  10. Bjornsson, R., Neese, F., Schrock, R. R., Einsle, O., and DeBeer, S. (2015) The discovery of Mo(III) in FeMoco: reuniting enzyme and model chemistry, Journal of Biological Inorganic Chemistry 20, 447-460.
  11. Martin-Diaconescu, V., Gennari, M., Gerey, B., Tsui, E., Kanady, J., Tran, R., Pecaut, J., Maganas, D., Krewald, V., Goure, E., Duboc, C., Yano, J., Agapie, T., Collomb, M.-N., and DeBeer, S. (2015) Ca K-Edge XAS as a Probe of Calcium Centers in Complex Systems, Inorganic Chemistry 54, 1283-1292 (Cover Article).
  12. Bjornsson, R., Lima, F. A., Spatzal, T., Weyhermueller, T., Glatzel, P., Bill, E., Einsle, O., Neese, F., and DeBeer, S. (2014) Identification of a spin-coupled Mo(III) in the nitrogenase iron-molybdenum cofactor, Chemical Science 5, 3096-3103.
  13. Hall, E. R., Pollock, C. J., Bendix, J., Collins, T. J., Glatzel, P., and DeBeer, S. (2014) Valence-to-Core-Detected X-ray Absorption Spectroscopy: Targeting Ligand Selectivity, Journal of the American Chemical Society 136, 10076-10084 (JACS Spotlight Article).
  14. Pollock, C. J., Delgado-Jaime, M. U., Atanasov, M., Neese, F., and DeBeer, S. (2014) K beta Mainline X-ray Emission Spectroscopy as an Experimental Probe of Metal-Ligand Covalency, Journal of the American Chemical Society 136, 9453-9463.
  15. Pollock, C. J., Lancaster, K. M., Finkelstein, K. D., and DeBeer, S. (2014) Study of Iron Dimers Reveals Angular Dependence of Valence-to-Core X-ray Emission Spectra, Inorganic Chemistry 53, 10378-10385.
  16. Delgado-Jaime, M. U., DeBeer, S., and Bauer, M. (2013) Valence-to-Core X-Ray Emission Spectroscopy of Iron-Carbonyl Complexes: Implications for the Examination of Catalytic Intermediates, Chemistry-a European Journal 19, 15888-15897.
  17. Krewald, V., Lassalle-Kaiser, B., Boron, T. T., III, Pollock, C. J., Kern, J., Beckwith, M. A., Yachandra, V. K., Pecoraro, V. L., Yano, J., Neese, F., and DeBeer, S. (2013) The Protonation States of Oxo-Bridged Mn-IV Dimers Resolved by Experimental and Computational Mn K Pre-Edge X-ray Absorption Spectroscopy, Inorganic Chemistry 52, 12904-12914.
  18. Lancaster, K. M., Hu, Y., Bergmann, U., Ribbe, M. W., and DeBeer, S. (2013) X-ray Spectroscopic Observation of an Interstitial Carbide in NifEN-Bound FeMoco Precursor, Journal of the American Chemical Society 135, 610-612.
  19. Lima, F. A., Bjornsson, R., Weyhermueller, T., Chandrasekaran, P., Glatzel, P., Neese, F., and DeBeer, S. (2013) High-resolution molybdenum K-edge X-ray absorption spectroscopy analyzed with time-dependent density functional theory, Physical Chemistry Chemical Physics 15, 20911-20920.
  20. Pollock, C. J., Grubel, K., Holland, P. L., and DeBeer, S. (2013) Experimentally Quantifying Small-Molecule Bond Activation Using Valence-to-Core X-ray Emission Spectroscopy, Journal of the American Chemical Society 135, 11803-11808.
  21. Lancaster, K. M., Roemelt, M., Ettenhuber, P., Hu, Y., Ribbe, M. W., Neese, F., Bergmann, U., and DeBeer, S. (2011) X-ray Emission Spectroscopy Evidences a Central Carbon in the Nitrogenase Iron-Molybdenum Cofactor, Science 334, 974-977.
  22. Pollock, C. J., and DeBeer, S. (2011) Valence-to-Core X-ray Emission Spectroscopy: A Sensitive Probe of the Nature of a Bound Ligand, Journal of the American Chemical Society 133, 5594-5601.
  23. Lee, N., Petrenko, T., Bergmann, U., Neese, F., and DeBeer, S. (2010) Probing Valence Orbital Composition with Iron K beta X-ray Emission Spectroscopy, Journal of the American Chemical Society 132, 9715-9727.

Full publicationlist on Researcher ID

Awards

  • 2016 Inorganic Chemistry Lectureship Award
  • 2015 Society of Biological Inorganic Chemistry, Early Career Award
  • 2013 European Research Council Consolidator Grant Awardee
  • 2012 Kavli Fellow, U.S. National Academy of Sciences
  • 2011-2013 Alfred P. Sloan Research Fellow

Group members

    Scientific staff

  • Nilson Bernardo Pereira
  • Dr. George Edward Cutsail III
  • Dr. Stefan Hugenbruch
  • Dr. Patricia Rodriguez Maciá
  • Jason W. Sidabras
  • Dr. Katarzyna Agnieszka Skorupska
  • Dr. Aleksandra Wandzilak

    Postdocs

  • Dr. Mustafa al Samarai
  • Dr. Nipa Chongdar
  • Dr. Maria Chrysina
  • Dr. Juliana De Mendonça Silva
  • Dr. Alexander Gutt
  • Dr. Justin Travis Henthorn
  • Dr. Yury Kutin
  • Natalia Levin Rojas
  • Dr. Dooshaye Moonshiram
  • Constanze Sommer
  • Dr. Benjamin van Kuiken
  • Dr. Sergio Augusto Venturinelli Jannuzzi
  • Dr. Sivathmeehan Yogendra

    PhD students

  • Abbas Beheshti Askari
  • Anselm Hahn
  • Stephanie Laga
  • Karolina Anna Lewandowska
  • Zachary Shane Mathe
  • Jeremy Patrick McGale
  • IMPRS-RECHARGE students

  • Rebeca Gomez Castillo

    Lab staff

  • Julius Dag Bauer
  • Yvonne Brandenburger
  • Nina Breuer
  • Petra Höfer
  • Julian Kleinpaß
  • Fabian Kowalewski
  • Christoph Laurich
  • Patricia Malkowski
  • Dagmar Merkl
  • Birgit Nöring
  • Michael Reus
  • Heike Schucht
  • Adrian van Wasen

Inorganic Spectroscopy

Our department focuses on the development and application of advanced X-ray spectroscopic tools for understanding processes in biological and chemical catalysis. We are interested in the development of both static and time-dependent probes of transition metal electronic structure, and in particular the development of two-dimensional X-ray spectroscopic probes, which enable enhanced selectivity. Challenging questions in energy research motivate our research. Namely how can earth-abundant base metals enable the activation of strong chemical bonds?  In this context, we focus on four transition-metal catalyzed reactions:

In all of the reactions shown above, there are both biological (homogenous) and heterogeneous catalysts, which are able to effect these conversions, albeit with varied efficiencies and in some cases only in multiple steps (e.g. industrial methane oxidation). We are interested in understanding the electronic structure of the catalysts and the transformations, which occur over the course of a reaction. Ideally this knowledge will form a fundamental basis for rational catalytic design. Our approach utilizes X-ray based spectroscopies, including resonant (RXES, RIXS) and non-resonant X-ray emission (XES), X-ray absorption (XAS), X-ray magnetic circular dichroism (XMCD), and nuclear resonant vibrational spectroscopy (NRVS) (Figure 1). In addition to our synchrotron-based studies, we are developing instrumentation for in-house X-ray spectroscopy. The applied combination of spectroscopic approaches provides insight into metal oxidation states, spin states, and the local coordination environments of the transition metal active sites. Our spectroscopic studies are coupled to more standard laboratory spectroscopy (UV-Vis, EPR, Raman and Mössbauer) and modern computational methods, in order to obtain quantitative insights into electronic structural changes in catalytic systems.

 

 

1. Spectroscopy Developments

1.1. Valence XES. Recent work in our research group has focused on developing the full information content of valence XES and applying this method to biological catalysts.1-12 In a valence XES measurement, one first ionizes a metal 1s electron and then monitors the resultant fluorescence after a valence electron refills the metal 1s core hole. As such, valence XES spectra provide a map of the ligand ionization potentials, and show a strong dependence on both ligand identity (i.e. C, N, or O) and protonation state (O2-, OH-, or H2O) (Figure 2). A notable application of this method was the use of valence XES to identify central carbon atom in the FeMoco cluster of nitrogenase.8 As the identification of the central atom had eluded characterization by other experimental approaches for almost a decade, this result serves to highlight the power and selectivity of the method. More recent studies in my group have focused on the use of valence XES to understand metallocofactor cluster biosynthesis and the atomic composition of FeVco in Vanadium nitrogenase.7, 13, 14

Valence XES is sensitive not only to the identity of ligand, but also to the degree of activation (i.e. weakening) of a bound ligand. For instance, when performing valence XES on a complex with an Fe-N2 moiety, spectral features which can be correlated with the N2 2s2s σ* orbital interacting with the Fe centers have been identified.12 As the N-N bond is lengthened, the energy of this transition decreases in energy, with a shift of more than 2 eV on going from an N-N triple bond to a cleaved nitride. This means that Fe valence XES is an ideal spectral probe of N-N bond cleavage (or cleavage of other diatomic ligands) by Fe (or any other transition metal).

To this end, we are developing dispersive valence XES, as a time-resolved probe of transition metal catalysis. Recently, funded by an ERC Consolidator Grant (N2RED, PI: DeBeer) and in collaboration with the group of Prof. Kangießer at TU Berlin, an in-house dispersive XES setup has been designed and commissioned. The instrument utilizes a laboratory X-ray source (Excillum, Metal Jet) in combination with a cylindrical Highly Annealed Pyrolytic Graphite (HAPG) crystal and a CCD detector to obtain XES in the 2.4-9 keV range (Figure 3). This unique in-house setup helps ease demands on synchrotron time, providing an ideal setup for concentrated samples and a means to obtain preliminary measurements before conducting more complex synchrotron or X-ray free electron laser measurements. In the context of synchrotron-based dispersive XES, the Department of Inorganic Spectroscopy is also leading development of the PINK beam line at the Energy Materials In-situ Laboratory in Berlin. PINK will provide an intense source for simultaneous “two-color” XES measurements of heterometallic catalysts. These efforts are lead by group leader Dr. Sergey Peredkov.

1.2 Resonant valence XES. To further enhance the selectivity of valence XES, we are developing resonant valence XES.2 This is a two-dimensional measurement where one resonantly excites a metal 1s core electron into the partially occupied and unoccupied states localized on the photoabsorber (i.e. the equivalent of an X-ray absorption edge scan), while simultaneously monitoring the highest energy emission processes (i.e. the valence XES).  In doing so, one is able to construct a two-dimensional plane, with the incident energy on the x-axis and the emission on the y-axis (Figure 4). The horizontal cuts through this plane, then represent the XAS data at a given emission energy and effectively correspond to “ligand selective XAS”. While the vertical cuts represent the XES data at a given incident energy or valence RXES. We believe this approach should be of particular utility for detecting the XAS of different types of metal-ligand interactions within complex media.

1.3. 2p3d RIXS. In addition to valence RXES, we are developing the full information content of transition metal 2p3d RXES or what is more commonly referred to as 2p3d RIXS.15 2p3d RIXS involves the dipole allowed excitation of a 2p63dn ground state to arrive at a2p53dn+1 intermediate state, which subsequently decays via a dipole allowed process to a 2p63dn’final state (Figure 5). Hence the difference between the ground state and the final state corresponds to formal dipole forbidden d-to-d transitions, which one arrives at through two dipole allowed processes. In a 2p3d RIXS measurement, the energy difference between the ground state and the final state is referred to as the “energy transfer” axis, which due to the nature of the experiment may be readily measured from 0-10 eV (or from 0 to over 80,000 cm-1). This means that spectral regions that cannot be accessed using standard optical or infrared spectroscopic probes are accessible. In addition, 2p3d RIXS experiments have been shown, in certain cases, to allow for the observation of formally spin forbidden transitions due to intermediate state spin orbit coupling. Hence, it may be possible to effectively measure the complete spin ladder, thus providing unprecedented experimental insights into transition metal electronic structure.

2. Applications

The spectroscopy developments discussed in the proceeding sections form a strong basis for applications in biological and chemical catalysis. In the section that follows, we briefly highlight some of our ongoing and planned efforts.

N2 reduction. The transformation of N2 to ammonia (NH3) is crucial for life on earth. This kinetically challenging processes is enabled biologically by the enzyme nitrogenase and industrially by the Haber-Bosch process, with remarkable efficiencies. In contrast, chemists have yet to synthesize a molecular system that can compete with either the biological or the industrial process. It is our view that inability to design effective molecular catalysts derives in part from a lack of fundamental knowledge. How does one effectively cleave N2, the strongest homodiatomic bond in known in chemistry? How does the metal catalyst interact with N2? What intermediate species are generated in the process of N2 bond breaking? To answer these questions we are applying advanced x-ray spectroscopic methods to both the biological and the heterogeneous catalysts. For the biological catalyst, we seek to understand the complex electronic structure of the ground state, the role of the central carbon, the role of the heterometal (Mo or V) and the site of substrate interaction. For the heterogeneous catalysts, we seek to understand the nature of the surface nitrides, the oxidation state of the “active” Fe and the interaction of the potassium promoter. These questions will be answered using the advanced spectroscopic approaches detailed in the preceding sections.

CH4 Oxidation. The biological oxidation of methane to methanol by soluble methane monoxygenase is a process of fundamental interest in the context of a sustainable energy economy. Presently we are focusing on elucidating the mechanism of biological methane oxidation, and in particular determining the controversial structure of the intermediate MMO-Q, which is the species responsible for extracting a proton from inert methane.  Utilizing high-resolution XAS methods, we have recently obtained new insights into the elextronic structure of MMO-Q. This motivates further freeze-quench, as well as in situ studies, of biological methane oxidation.

H2O Oxidation. Similar to our studies of N2 reduction, we are also interested in understanding the process of Mn-mediated water oxidation at both the biological and heterogeneous limits. To this end, we utilize advanced X-ray spectroscopic methods to examine Mn birnessites, surface doped Mn systems, and the Mn4Ca active site of photosystem II. “Two-color” simultaneous Mn and Ca XES will be utilized in a time-resolved fashion to evaluate the role of both the Mn and the Ca in catalysis. Our goal is to obtain atomic level insights into the factors that govern O-O bond formation.

H2 production. Hydrogen production and activation has been the focus of extensive research over the last few decades in the context of renewable energy and carbon-neutral fuels. The most prevalent and robust hydrogenases contain a heterobimetallic [NiFe] active site. The redox-active nickel center is thought to play a critical role in hydrogen binding and activation, and many prior studies using x-ray crystallography, electrochemistry, FTIR, and EPR spectroscopy have been carried out to characterize the activation and mechanism of the enzyme. However, of the three catalytically relevant states, only the Ni-C state is paramagnetic.  Thus, along with the aerobically-inactivated, hydroxide-bridged Ni-B state, the hydride-bridged Ni-C state represents the only catalytic intermediate that has been structurally well-characterized. Many approaches have been attempted to characterize the other two intermediates, the Ni-SI and Ni-R states, including FTIR and X-ray absorption spectroscopy. However, a number of questions remain, including identification of the nickel spin states, nature of the bridging ligand between the two metal centers in each redox state, metal to which dihydrogen coordinates, and mode of hydrogen binding to that metal.  These questions will be addressed through a combination of advanced X-ray based approaches and should provide fundamental insights into the mechanism of biological H2 production.

References

[1] Delgado-Jaime, M. U., Dible, B. R., Chiang, K. P., Brennessel, W. W., Bergmann, U., Holland, P. L., and DeBeer, S. (2011) Identification of a Single Light Atom within a Multinuclear Metal Cluster Using Valence-to-Core X-ray Emission Spectroscopy, Inorg Chem 50, 10709-10717.

[2] Hall, E. R., Pollock, C. J., Bendix, J., Collins, T. J., Glatzel, P., and DeBeer, S. (2014) Valence-to-Core-Detected X-ray Absorption Spectroscopy: Targeting Ligand Selectivity, J Am Chem Soc 136, 10076-10084.

[3] Hugenbruch, S., Shafaat, H. S., Kramer, T., Delgado-Jaime, M. U., Weber, K., Neese, F., Lubitz, W., and DeBeer, S. (2016) In search of metal hydrides: an X-ray absorption and emission study of [NiFe] hydrogenase model complexes, Phys Chem Chem Phys 18, 10688-10699.

[4] Kowalska, J., and DeBeer, S. (2015) The role of X-ray spectroscopy in understanding the geometric and electronic structure of nitrogenase, Bba-Mol Cell Res 1853, 1406-1415.

[5] Kowalska, J. K., Hahn, A. W., Albers, A., Schiewer, C. E., Bjornsson, R., Lima, F. A., Meyer, F., and DeBeer, S. (2016) X-ray Absorption and Emission Spectroscopic Studies of [L2Fe2S2](n) Model Complexes: Implications for the Experimental Evaluation of Redox States in Iron-Sulfur Clusters, Inorg Chem 55, 4485-4497.

[6] Kowalska, J. K., Lima, F. A., Pollock, C. J., Rees, J. A., and DeBeer, S. (2016) A Practical Guide to High-resolution X-ray Spectroscopic Measurements and their Applications in Bioinorganic Chemistry, Isr J Chem 56, 803-815.

[7] Lancaster, K. M., Hu, Y. L., Bergmann, U., Ribbe, M. W., and DeBeer, S. (2013) X-ray Spectroscopic Observation of an Interstitial Carbide in NifEN-Bound FeMoco Precursor, J Am Chem Soc 135, 610-612.

[8] Lancaster, K. M., Roemelt, M., Ettenhuber, P., Hu, Y. L., Ribbe, M. W., Neese, F., Bergmann, U., and DeBeer, S. (2011) X-ray Emission Spectroscopy Evidences a Central Carbon in the Nitrogenase Iron-Molybdenum Cofactor, Science 334, 974-977.

[9] Lee, N., Petrenko, T., Bergmann, U., Neese, F., and DeBeer, S. (2010) Probing Valence Orbital Composition with Iron K beta X-ray Emission Spectroscopy, J Am Chem Soc 132, 9715-9727.

[10] Pollock, C. J., and DeBeer, S. (2011) Valence-to-Core X-ray Emission Spectroscopy: A Sensitive Probe of the Nature of a Bound Ligand, J Am Chem Soc 133, 5594-5601.

[11] Pollock, C. J., and DeBeer, S. (2015) Insights into the Geometric and Electronic Structure of Transition Metal Centers from Valence-to-Core X-ray Emission Spectroscopy, Accounts Chem Res 48, 2967-2975.

[12] Pollock, C. J., Grubel, K., Holland, P. L., and DeBeer, S. (2013) Experimentally Quantifying Small-Molecule Bond Activation Using Valence-to-Core X-ray Emission Spectroscopy, J Am Chem Soc 135, 11803-11808.

[13] Rees, J. A., Martin-Diaconescu, V., Kovacs, J. A., and DeBeer, S. (2015) X-ray Absorption and Emission Study of Dioxygen Activation by a Small-Molecule Manganese Complex, Inorg Chem 54, 6410-6422.

[14] Rees, J. A., Bjornsson, R., Kowalska, J. K., Lima, F. A., Schlesier, J., Sippel, D., Weyhermueller, T., Einsle, O., Kovacs, J. A., and DeBeer, S. (2017) Comparative electronic structures of nitrogenase FeMoco and FeVco, Dalton T 46, 2445-2455.

[15] Van Kuiken, B. E., Hahn, A. W., Maganas, D., and DeBeer, S. (2016) Measuring Spin-Allowed and Spin-Forbidden d-d Excitations in Vanadium Complexes with 2p3d Resonant Inelastic X-ray Scattering, Inorg Chem 55, 11497-11501.